It is not very hard to numerically simulate interacting particle systems. There are pages on the internet where you can run some chosen systems. I quite like this applet. Code (in python) for simulating a stochastic Ising model and pictures can be found here.
I myself use Octave for simulating interacting particle systems. I have collected a number of executable scripts in this library. If you want to use my scripts, then download the libary, save it in a directory where you want to do your simulations and run "tar -xf library.tar" to unpack the archive. You will also need to have Octave installed on your computer. It is possible that the scripts also function under Matlab, which is a very similar program (but not freeware). Here is a list of the main scripts in the library with a short description.
If you run the script of a one dimensional model you will see a space-time picture with space plotted horizontally and time running upwards. If you run the script of a two dimensional model you will see the initial state. To move forward or backward in time, you should run the scripts:
The library also contains a few other scripts that are functions that are called from the other scripts. These are:
If you want to change the parameters of the model or change the initial state, then open the scripts in a text editor and change the appropriate lines. If your favorite interacting particle system is not included in the scripts, then you can write your own script, using one of the scripts above as a template. For spin flip systems, it suffices to define the rates of your choice in fliprates.
Octave pictures can be exported as pdf files that can then be included in Latex. For three dimensional systems I use Tikz to give the simulation results a three dimensional appearance. Running Latex on the example document cube.tex will produce a 3D visualization of the pdf file voter3.pdf.
Exporting a lot of Octave figures is a tedious job. Octave moreover exports these figures including surrounding white space which has to be removed in an image editing program before it can be used in Latex. For Linux users, I have written three scripts that make it easier to export pictures. After running a simulation, in Octave run the script present. This produces a number of files with the extension .pre. Running the script pre2pict in a terminal will convert these into pdf files. This last step works only under Linux, unfortunately. Make sure to save both pre2pict and pre2ppm (which is called from pre2pict) as executable files in your bin directory.